Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V A ABC (class in pygom.approximate_bayesian_computation) add_compiled_sympy_object() (pygom.model.DeterministicOde method) add_func() (pygom.model.DeterministicOde method) adjoint() (pygom.model.DeterministicOde method) adjoint_interpolate() (pygom.model.DeterministicOde method) adjoint_interpolate_jacobian() (pygom.model.DeterministicOde method) adjoint_interpolate_jacobian_T() (pygom.model.DeterministicOde method) adjoint_interpolate_T() (pygom.model.DeterministicOde method) adjoint_jacobian() (pygom.model.DeterministicOde method) adjoint_jacobian_T() (pygom.model.DeterministicOde method) adjoint_T() (pygom.model.DeterministicOde method) antiderivative() (pygom.loss.UnivariateSpline method) args (pygom.loss.partial attribute) asymptotic() (in module pygom.loss) B bootstrap() (in module pygom.loss) C check_array_type() (in module pygom.model) check_dimension() (in module pygom.model) cle() (pygom.model.SimulateOde method) clear() (pygom.model.OrderedDict method) CompileCanary (class in pygom.model) compileCode (class in pygom.model) compileExpr() (pygom.model.compileCode method) compileExprAndFormat() (pygom.model.compileCode method) continue_posterior_sample() (pygom.approximate_bayesian_computation.ABC method) copy() (pygom.model.OrderedDict method) cost_grad_interpolant() (in module pygom.loss) cost_interpolant() (in module pygom.loss) cost_sample() (in module pygom.loss) create_loss() (in module pygom.approximate_bayesian_computation) D dbeta() (in module pygom.utilR) dbinom() (in module pygom.utilR) dchisq() (in module pygom.utilR) derivative() (pygom.loss.UnivariateSpline method) derivatives() (pygom.loss.UnivariateSpline method) destination (pygom.model.Transition property) DeterministicOde (class in pygom.model) dexp() (in module pygom.utilR) DFE() (in module pygom.model) dgamma() (in module pygom.utilR) diff2Loss() (pygom.loss.Gamma method) (pygom.loss.NegBinom method) (pygom.loss.Normal method) (pygom.loss.Poisson method) (pygom.loss.Square method) diff_jacobian_T() (pygom.model.DeterministicOde method) diff_loss() (pygom.loss.Gamma method) (pygom.loss.NegBinom method) (pygom.loss.Normal method) (pygom.loss.Poisson method) (pygom.loss.Square method) disease_progression_matrices() (in module pygom.model) dmvnorm() (in module pygom.utilR) dnbinom() (in module pygom.utilR) dnorm() (in module pygom.utilR) dpois() (in module pygom.utilR) dunif() (in module pygom.utilR) E equation (pygom.model.Transition property) eval_forwardforward() (pygom.model.DeterministicOde method) eval_hessian() (pygom.model.DeterministicOde method) eval_sens_jacobian_state() (pygom.model.DeterministicOde method) eval_sensitivity() (pygom.model.DeterministicOde method) eval_sensitivityIV() (pygom.model.DeterministicOde method) Event (class in pygom.model) exact() (pygom.model.SimulateOde method) F FitzHugh() (in module pygom.model) forwardforward() (pygom.model.DeterministicOde method) forwardforward_T() (pygom.model.DeterministicOde method) fromkeys() (pygom.model.OrderedDict method) func (pygom.loss.partial attribute) G Gamma (class in pygom.loss) gamma_mu_shape() (in module pygom.utilR) GammaLoss (class in pygom.loss) geometric() (in module pygom.loss) get_bd_from_ode() (pygom.model.SimulateOde method) get_coeffs() (pygom.loss.UnivariateSpline method) get_diff_jacobian_eqn() (pygom.model.DeterministicOde method) get_function() (in module pygom.approximate_bayesian_computation) get_grad_eqn() (pygom.model.DeterministicOde method) get_grad_jacobian_eqn() (pygom.model.DeterministicOde method) get_hessian_eqn() (pygom.model.DeterministicOde method) get_init() (in module pygom.loss) get_jacobian_eqn() (pygom.model.DeterministicOde method) get_knots() (pygom.loss.UnivariateSpline method) get_ode_eqn() (pygom.model.DeterministicOde method) get_posterior_sample() (pygom.approximate_bayesian_computation.ABC method) get_posterior_sample_original() (pygom.approximate_bayesian_computation.ABC method) get_residual() (pygom.loss.UnivariateSpline method) get_tolerance() (pygom.approximate_bayesian_computation.ABC method) get_transition_graph() (pygom.model.DeterministicOde method) get_TransitionJacobian() (pygom.model.SimulateOde method) get_TransitionMean() (pygom.model.SimulateOde method) get_transitions_from_ode() (pygom.model.SimulateOde method) get_TransitionVar() (pygom.model.SimulateOde method) get_unrolled_obj() (pygom.model.SimulateOde method) grad_jacobianT() (pygom.model.DeterministicOde method) grad_sample() (in module pygom.loss) grad_T() (pygom.model.DeterministicOde method) H hessian() (pygom.model.DeterministicOde method) hybrid() (pygom.model.SimulateOde method) I Influenza_SLIARD() (in module pygom.model) initial_state (pygom.model.DeterministicOde property) initial_time (pygom.model.DeterministicOde property) initial_values (pygom.model.DeterministicOde property) integral() (pygom.loss.UnivariateSpline method) integrate() (in module pygom.model) (pygom.model.DeterministicOde method) integrate2() (pygom.model.DeterministicOde method) integrateFuncJac() (in module pygom.model) interpolate() (in module pygom.loss) is_between_state() (pygom.model.Transition method) is_list_like() (in module pygom.model) is_stiff() (pygom.model.DeterministicOde method) items() (pygom.model.OrderedDict method) J jac_sample() (in module pygom.loss) jacobian_eigenvalue() (pygom.model.DeterministicOde method) jacobian_T() (pygom.model.DeterministicOde method) K keys() (pygom.model.OrderedDict method) keywords (pygom.loss.partial attribute) kronParam() (pygom.model.shapeAdjust method) kronState() (pygom.model.shapeAdjust method) L leastsq() (in module pygom.loss) Legrand_Ebola_SEIHFR() (in module pygom.model) linear_ode() (pygom.model.DeterministicOde method) Lorenz() (in module pygom.model) loss() (pygom.loss.Gamma method) (pygom.loss.NegBinom method) (pygom.loss.Normal method) (pygom.loss.Poisson method) (pygom.loss.Square method) Lotka_Volterra() (in module pygom.model) M matToVecFF() (pygom.model.shapeAdjust method) matToVecSens() (pygom.model.shapeAdjust method) minimize_scalar() (in module pygom.loss) module pygom.approximate_bayesian_computation pygom.loss pygom.model pygom.utilR move_to_end() (pygom.model.OrderedDict method) N nb2pmf() (in module pygom.utilR) NegBinom (class in pygom.loss) NegBinomLoss (class in pygom.loss) Normal (class in pygom.loss) NormalLoss (class in pygom.loss) O ode_and_forwardforward() (pygom.model.DeterministicOde method) ode_and_forwardforward_jacobian() (pygom.model.DeterministicOde method) ode_and_forwardforward_jacobian_T() (pygom.model.DeterministicOde method) ode_and_forwardforward_T() (pygom.model.DeterministicOde method) ode_and_sensitivity() (pygom.model.DeterministicOde method) ode_and_sensitivity_jacobian() (pygom.model.DeterministicOde method) ode_and_sensitivity_jacobian_T() (pygom.model.DeterministicOde method) ode_and_sensitivity_T() (pygom.model.DeterministicOde method) ode_and_sensitivityIV() (pygom.model.DeterministicOde method) ode_and_sensitivityIV_jacobian() (pygom.model.DeterministicOde method) ode_and_sensitivityIV_jacobian_T() (pygom.model.DeterministicOde method) ode_and_sensitivityIV_T() (pygom.model.DeterministicOde method) ode_T() (pygom.model.DeterministicOde method) ODEVariable (class in pygom.model) OrderedDict (class in pygom.model) origin (pygom.model.Transition property) P Parameter (class in pygom.approximate_bayesian_computation) partial (class in pygom.loss) pbinom() (in module pygom.utilR) pchisq() (in module pygom.utilR) pexp() (in module pygom.utilR) pgamma() (in module pygom.utilR) plot() (pygom.model.DeterministicOde method) (pygom.model.SimulateOde method) plot_det() (in module pygom.model) plot_pointwise_predictions() (pygom.approximate_bayesian_computation.ABC method) plot_posterior_histograms() (pygom.approximate_bayesian_computation.ABC method) plot_scatter() (pygom.approximate_bayesian_computation.ABC method) plot_stoc() (in module pygom.model) pnbinom() (in module pygom.utilR) pnorm() (in module pygom.utilR) Poisson (class in pygom.loss) PoissonLoss (class in pygom.loss) pop() (pygom.model.OrderedDict method) popitem() (pygom.model.OrderedDict method) ppois() (in module pygom.utilR) print_ode() (pygom.model.DeterministicOde method) profile() (in module pygom.loss) punif() (in module pygom.utilR) pygom.approximate_bayesian_computation module pygom.loss module pygom.model module pygom.utilR module Q qbeta() (in module pygom.utilR) qbinom() (in module pygom.utilR) qchisq() (in module pygom.utilR) qexp() (in module pygom.utilR) qgamma() (in module pygom.utilR) qnbinom() (in module pygom.utilR) qnorm() (in module pygom.utilR) qpois() (in module pygom.utilR) qunif() (in module pygom.utilR) R R0() (in module pygom.model) R0_from_matrix() (in module pygom.model) rbeta() (in module pygom.utilR) rbinom() (in module pygom.utilR) rchisq() (in module pygom.utilR) reset() (pygom.model.CompileCanary method) residual_interpolant() (in module pygom.loss) residual_sample() (in module pygom.loss) rexp() (in module pygom.utilR) rgamma() (in module pygom.utilR) rmvnorm() (in module pygom.utilR) rnorm() (in module pygom.utilR) Robertson() (in module pygom.model) roots() (pygom.loss.UnivariateSpline method) rpois() (in module pygom.utilR) runif() (in module pygom.utilR) S SEIR() (in module pygom.model) SEIR_Birth_Death() (in module pygom.model) SEIR_Birth_Death_Periodic() (in module pygom.model) SEIR_Birth_Death_Periodic_Waning_Intro() (in module pygom.model) SEIR_Multiple() (in module pygom.model) sens_jacobian_state() (pygom.model.DeterministicOde method) sens_jacobian_state_T() (pygom.model.DeterministicOde method) sensitivity() (pygom.model.DeterministicOde method) sensitivity_T() (pygom.model.DeterministicOde method) sensitivityIV() (pygom.model.DeterministicOde method) sensitivityIV_T() (pygom.model.DeterministicOde method) set_smoothing_factor() (pygom.loss.UnivariateSpline method) setdefault() (pygom.model.OrderedDict method) shapeAdjust (class in pygom.model) sigma_nearest_neighbours() (pygom.approximate_bayesian_computation.ABC method) simps() (in module pygom.loss) simulate_param() (pygom.model.SimulateOde method) SimulateOde (class in pygom.model) SIR() (in module pygom.model) SIR_Birth_Death() (in module pygom.model) SIR_norm() (in module pygom.model) SIS() (in module pygom.model) SIS_Periodic() (in module pygom.model) solve_determ() (pygom.model.SimulateOde method) solve_stochast() (pygom.model.SimulateOde method) Square (class in pygom.loss) SquareLoss (class in pygom.loss) stochastic (pygom.model.Transition property) str_or_list() (in module pygom.model) T test_seed() (in module pygom.utilR) total_transition() (pygom.model.SimulateOde method) Transition (class in pygom.model) transition_type (pygom.model.Transition property) TransitionType (class in pygom.model) trip() (pygom.model.CompileCanary method) U UnivariateSpline (class in pygom.loss) update() (pygom.model.OrderedDict method) V values() (pygom.model.OrderedDict method) vanDerPol() (in module pygom.model) vecToMatFF() (pygom.model.shapeAdjust method) vecToMatSens() (pygom.model.shapeAdjust method)
